ReNaBI : Tools - Transcriptomics : probe design

Tools : Transcriptomics : probe design

Name	Platform	Description	Link
CAPS marker	OUEST-genopole	description after restriction profiles analysis
Clone selection	Lille
Degenerate primers design	OUEST-genopole	Degenerate primers based on a set of proteic sequences
FindExpress	Lille	internal primer design on a set of nucleotidic sequences
Genofrag	OUEST-genopole	Primer design program in two steps, first primer selection then genome fragmentation
Interactive PCR Primer Design	OUEST-genopole	Part of GeneFischer package
Microsatellites primers	OUEST-genopole	Microsatellite repeat search with Sputnik and primers design with Primer3
Oligo Heat Map		an online tool to estimate and display hybridizations of oligonucleotides onto DNA sequences	Use Oligo Heat Map
Oligo search	Lille
Primo	OUEST-genopole Pasteur Paris	A primer design tool
Roso	PRABI	A software to design optimized oligonucleotide probes (size over 25 nucleotides) for microarrays
Spads	Genoplante-Info	design a GST (Gene-Specific Tag) and a specific primer set for its PCR amplification, on a genomic sequence, knowing the gene structure	Spads webpage
XXFrag	Lille	help the biologist in the creation of Biochips by collecting some fragments coming from the pseudogenome required

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