Tools : DNA sequences
| Name | Platform | Description | Link | |
| 16S rDNA Bacterial Identification | 16S bacterial cultures Blast Server | Blast on sequences from cultured bacteria | ||
| AAT - Analysis and annotation tool | OUEST-genopole |
Identifies and predicts genes in a DNA sequence by comparing the query sequence against cDNA and protein sequence databases | online form | |
| BCM Search Launcher | OUEST-genopole |
Gene Feature Searches : Exon, Intron, and Gene Model Prediction. | homepage | |
 |
BlastSets | Bordeaux |
New strategy for the representation and the integration of biomolecular knowledge at a cellular scale. | webpage |
|
CDS search using RecSta | PRABI |
search for coding regions (CDS or exon) in a sequence | |
|
Codon adaptation factor | PRABI |
computes the codon adaptation factor | |
|
Codon frequencies | PRABI |
computes the codons or amino-acid frequencies on a set of sequences previously selected using WWW-Query | |
|
Codon usage index | PRABI |
calculates a codon usage index for a set of genes | |
|
Correspondence analysis | PRABI |
a method suited for studying differenciation among codons or for examining trends in amino-acids composition | |
|
CpG island promoter detection | PRABI |
a mammalian-specific software which proposes to identify the promoter regions associated with CpG islands | |
|
Exofish | Genoscope |
Exon Finding by Sequences Homology | Exofish server |
|
FindTarget | MIG Jouy |
subtractive genome analysis to find bacterial genes of interest | webpage (french) |
| GeneID | OUEST-genopole |
Program to predict genes, exons, splice sites and other signals along a DNA sequence. | homepage | |
| GenScan | OUEST-genopole |
Predicts the locations and exon-intron structures of genes in genomic sequences from a variety of organisms. | web server at MIT | |
|
Gepeto | Toulouse |
GEne Prediction Evaluation TOol | Gepeto online |
|
IMGT/JunctionAnalysis | Montpellier |
Analysis of immunoglobulin and T cell receptor junctions | homepage |
| Oligo Heat Map | an online tool to estimate and display hybridizations of oligonucleotides onto DNA sequences | Use Oligo Heat Map | ||
|
Oriloc | PRABI |
a program to predict the putative origin and terminus of replication in procaryotic genomes. | |
|
R’HOM | MIG Jouy |
Research of HOMogeneous regions in DNA sequences | homepage |
|
R’MES | MIG Jouy |
Programs to Find Words with Unexpected Frequencies in DNA Sequences | homepage |
| RepeatMasker | Pasteur Paris Bordeaux |
returns a masked query sequence ready for database searches as well as a table annotating the masked regions | online form in Bordeaux | |
|
Sarment | PRABI |
sequence segmentation via HMM analysis and Maximal Predictive Partitioning | homepage |
|
seqinR | PRABI |
an R package devoted to exploratory data analysis and data visualisation of biological sequences | seqinR homepage |
|
SHOW | MIG Jouy |
Structured HOMogeneities Watcher | homepage |
|
SNP detection | Bordeaux |
This system permits the detection via two different strategies : SNP detection in EST databases, and SNP detection in sequences produced by direct DNA sequencing. | webpage |
|
Tuiuiu | OUEST-genopole |
Multiple Repeat Search Filter | Mobyle pipeline |
Search
News
- 25/11/2010 - IPG ’10
- 20/10/2010 - TAGp 2010
- 27/09/2010 - Workshop on Bayesian Networks, Paris
- all the news...
- RSS news thread
Latest articles
