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Sequence format conversion - ReadSeq

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READSEQ will read in formatted sequence files and convert the sequence information in the files into another file that has a different format. Readseq is particularly useful as it automatically detects many sequence formats, and interconverts among them.

Formats which readseq understands:
-  IG/Stanford, used by Intelligenetics and others
-  GenBank/GB, genbank flatfile format
-  NBRF format
-  EMBL, EMBL flatfile format
-  GCG, single sequence format of GCG software
-  DNAStrider, for common Mac program
-  Fitch format, limited use
-  Pearson/Fasta, a common format used by Fasta programs and others
-  Zuker format, limited use. Input only.
-  Olsen, format printed by Olsen VMS sequence editor. Input only.
-  Phylip3.2, sequential format for Phylip programs
-  Phylip, interleaved format for Phylip programs (v3.3, v3.4)
-  Plain/Raw, sequence data only (no name, document, numbering)
-  MSF multi sequence format used by GCG software
-  PAUP’s multiple sequence (NEXUS) format
-  PIR/CODATA format used by PIR
-  ASN.1 format used by NCBI
-  etc.
-  Pretty print with various options for nice looking output. Output only.

You can use readseq online :
-  in Lille
-  at Pasteur Paris


see online : Homepage at IUBio

last update : 24/10/2005

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